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single cell rna seq datasets  (Broad Clinical Labs)
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Broad Clinical Labs single cell rna seq datasets
Single Cell Rna Seq Datasets, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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single cell rna seq datasets - by Bioz Stars, 2026-05
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single nucleus rna seq dataset  (Broad Clinical Labs)
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Broad Clinical Labs single nucleus rna seq dataset
Transcriptomic landscape of lncRNAs in human placental trophoblasts. (A) UMAP plot showing first-trimester and term <t>placental</t> <t>single-nucleus</t> transcriptomes (CTB, cytotrophoblast; EVT, extravillous trophoblast; STB, syncytiotrophoblast; STR, stromal cell; e, early; l, late). (B) UMAP plot showing the distribution of first-trimester and term placental samples. (C) Pie plot of the fraction of lncRNAs and mRNAs in snRNA-seq and bulk <t>RNA-seq,</t> respectively. The value “ n ” indicates the average number of detected transcripts per cell for both lncRNAs and mRNAs based on the experimentally measured data. (D) Box plots of transcript counts in per cell type. Statistical significance was determined by two-sided Wilcoxon rank-sum tests (**** P < 0.0001). (E) Volcano plot of cell-type-specific lncRNAs across trophoblast subtypes. The x -axis represents the difference in the percentage of cells expressing each gene between the two compared cell types (Δ percentage = pct.1 − pct.2), while the y -axis indicates the log 2 (fold change) in average gene expression. This representation integrates both expression magnitude and expression prevalence at the single-cell level. (F) Heatmap of cell-type-specific lncRNA expression atlas across trophoblast populations. (G) UMAP plots showing the expression distribution of representative lncRNAs (Color gradient represents the average expression level per cell). (H) GO biological process terms enriched in protein-coding genes (PCGs) associated with stage-specific lncRNAs.
Single Nucleus Rna Seq Dataset, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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single nucleus rna seq dataset - by Bioz Stars, 2026-05
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nucleus rna sequencing snrna seq datasets  (Broad Clinical Labs)
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Broad Clinical Labs nucleus rna sequencing snrna seq datasets
Transcriptomic landscape of lncRNAs in human placental trophoblasts. (A) UMAP plot showing first-trimester and term <t>placental</t> <t>single-nucleus</t> transcriptomes (CTB, cytotrophoblast; EVT, extravillous trophoblast; STB, syncytiotrophoblast; STR, stromal cell; e, early; l, late). (B) UMAP plot showing the distribution of first-trimester and term placental samples. (C) Pie plot of the fraction of lncRNAs and mRNAs in snRNA-seq and bulk <t>RNA-seq,</t> respectively. The value “ n ” indicates the average number of detected transcripts per cell for both lncRNAs and mRNAs based on the experimentally measured data. (D) Box plots of transcript counts in per cell type. Statistical significance was determined by two-sided Wilcoxon rank-sum tests (**** P < 0.0001). (E) Volcano plot of cell-type-specific lncRNAs across trophoblast subtypes. The x -axis represents the difference in the percentage of cells expressing each gene between the two compared cell types (Δ percentage = pct.1 − pct.2), while the y -axis indicates the log 2 (fold change) in average gene expression. This representation integrates both expression magnitude and expression prevalence at the single-cell level. (F) Heatmap of cell-type-specific lncRNA expression atlas across trophoblast populations. (G) UMAP plots showing the expression distribution of representative lncRNAs (Color gradient represents the average expression level per cell). (H) GO biological process terms enriched in protein-coding genes (PCGs) associated with stage-specific lncRNAs.
Nucleus Rna Sequencing Snrna Seq Datasets, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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nucleus rna sequencing snrna seq datasets - by Bioz Stars, 2026-05
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rna seq dataset  (Broad Clinical Labs)
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Broad Clinical Labs rna seq dataset
H19 expression in different sarcoma subtypes. (A) <t>H19</t> <t>RNA‐seq</t> expression data across cell lines from 38 different cancer types derived from the publicly available CCLE database. (B) H19 RNA‐seq expression data from 31 cancer types in tumor tissue derived from TCGA and GTEx data (SARC = sarcoma; TMP = Transcript Per Million). (C) The expression of H19 in 7 different sarcoma cell lines was measured by qRT‐PCR and normalized to the housekeeper genes GAPDH and U6 ( n = 3; mean ± SD). (D) Representative pictures of RNA in situ hybridization of H19 in the liposarcoma cell line SW872 showing a heterogenous expression pattern.
Rna Seq Dataset, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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rna seq dataset - by Bioz Stars, 2026-05
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cancer cell line encyclopedia ccle rna seq dataset  (Broad Clinical Labs)
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Broad Clinical Labs cancer cell line encyclopedia ccle rna seq dataset
H19 expression in different sarcoma subtypes. (A) <t>H19</t> <t>RNA‐seq</t> expression data across cell lines from 38 different cancer types derived from the publicly available CCLE database. (B) H19 RNA‐seq expression data from 31 cancer types in tumor tissue derived from TCGA and GTEx data (SARC = sarcoma; TMP = Transcript Per Million). (C) The expression of H19 in 7 different sarcoma cell lines was measured by qRT‐PCR and normalized to the housekeeper genes GAPDH and U6 ( n = 3; mean ± SD). (D) Representative pictures of RNA in situ hybridization of H19 in the liposarcoma cell line SW872 showing a heterogenous expression pattern.
Cancer Cell Line Encyclopedia Ccle Rna Seq Dataset, supplied by Broad Clinical Labs, used in various techniques. Bioz Stars score: 96/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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rna-seq datasets  (Illumina Inc)
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Illumina Inc rna-seq datasets
H19 expression in different sarcoma subtypes. (A) <t>H19</t> <t>RNA‐seq</t> expression data across cell lines from 38 different cancer types derived from the publicly available CCLE database. (B) H19 RNA‐seq expression data from 31 cancer types in tumor tissue derived from TCGA and GTEx data (SARC = sarcoma; TMP = Transcript Per Million). (C) The expression of H19 in 7 different sarcoma cell lines was measured by qRT‐PCR and normalized to the housekeeper genes GAPDH and U6 ( n = 3; mean ± SD). (D) Representative pictures of RNA in situ hybridization of H19 in the liposarcoma cell line SW872 showing a heterogenous expression pattern.
Rna Seq Datasets, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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e18 mouse whole brain single-cell rna-seq dataset  (10X Genomics)
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10X Genomics e18 mouse whole brain single-cell rna-seq dataset
H19 expression in different sarcoma subtypes. (A) <t>H19</t> <t>RNA‐seq</t> expression data across cell lines from 38 different cancer types derived from the publicly available CCLE database. (B) H19 RNA‐seq expression data from 31 cancer types in tumor tissue derived from TCGA and GTEx data (SARC = sarcoma; TMP = Transcript Per Million). (C) The expression of H19 in 7 different sarcoma cell lines was measured by qRT‐PCR and normalized to the housekeeper genes GAPDH and U6 ( n = 3; mean ± SD). (D) Representative pictures of RNA in situ hybridization of H19 in the liposarcoma cell line SW872 showing a heterogenous expression pattern.
E18 Mouse Whole Brain Single Cell Rna Seq Dataset, supplied by 10X Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
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e18 mouse whole brain single-cell rna-seq dataset - by Bioz Stars, 2026-05
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short read rna-seq datasets  (Illumina Inc)
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Illumina Inc short read rna-seq datasets
H19 expression in different sarcoma subtypes. (A) <t>H19</t> <t>RNA‐seq</t> expression data across cell lines from 38 different cancer types derived from the publicly available CCLE database. (B) H19 RNA‐seq expression data from 31 cancer types in tumor tissue derived from TCGA and GTEx data (SARC = sarcoma; TMP = Transcript Per Million). (C) The expression of H19 in 7 different sarcoma cell lines was measured by qRT‐PCR and normalized to the housekeeper genes GAPDH and U6 ( n = 3; mean ± SD). (D) Representative pictures of RNA in situ hybridization of H19 in the liposarcoma cell line SW872 showing a heterogenous expression pattern.
Short Read Rna Seq Datasets, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/short read rna-seq datasets/product/Illumina Inc
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short read rna-seq datasets - by Bioz Stars, 2026-05
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illumina rna-seq datasets  (Illumina Inc)
90
Illumina Inc illumina rna-seq datasets
H19 expression in different sarcoma subtypes. (A) <t>H19</t> <t>RNA‐seq</t> expression data across cell lines from 38 different cancer types derived from the publicly available CCLE database. (B) H19 RNA‐seq expression data from 31 cancer types in tumor tissue derived from TCGA and GTEx data (SARC = sarcoma; TMP = Transcript Per Million). (C) The expression of H19 in 7 different sarcoma cell lines was measured by qRT‐PCR and normalized to the housekeeper genes GAPDH and U6 ( n = 3; mean ± SD). (D) Representative pictures of RNA in situ hybridization of H19 in the liposarcoma cell line SW872 showing a heterogenous expression pattern.
Illumina Rna Seq Datasets, supplied by Illumina Inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/result/illumina rna-seq datasets/product/Illumina Inc
Average 90 stars, based on 1 article reviews
illumina rna-seq datasets - by Bioz Stars, 2026-05
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Image Search Results


Transcriptomic landscape of lncRNAs in human placental trophoblasts. (A) UMAP plot showing first-trimester and term placental single-nucleus transcriptomes (CTB, cytotrophoblast; EVT, extravillous trophoblast; STB, syncytiotrophoblast; STR, stromal cell; e, early; l, late). (B) UMAP plot showing the distribution of first-trimester and term placental samples. (C) Pie plot of the fraction of lncRNAs and mRNAs in snRNA-seq and bulk RNA-seq, respectively. The value “ n ” indicates the average number of detected transcripts per cell for both lncRNAs and mRNAs based on the experimentally measured data. (D) Box plots of transcript counts in per cell type. Statistical significance was determined by two-sided Wilcoxon rank-sum tests (**** P < 0.0001). (E) Volcano plot of cell-type-specific lncRNAs across trophoblast subtypes. The x -axis represents the difference in the percentage of cells expressing each gene between the two compared cell types (Δ percentage = pct.1 − pct.2), while the y -axis indicates the log 2 (fold change) in average gene expression. This representation integrates both expression magnitude and expression prevalence at the single-cell level. (F) Heatmap of cell-type-specific lncRNA expression atlas across trophoblast populations. (G) UMAP plots showing the expression distribution of representative lncRNAs (Color gradient represents the average expression level per cell). (H) GO biological process terms enriched in protein-coding genes (PCGs) associated with stage-specific lncRNAs.

Journal: Life Medicine

Article Title: Single-cell analysis reveals essential lncRNAs regulating human trophoblast lineage differentiation

doi: 10.1093/lifemedi/lnag010

Figure Lengend Snippet: Transcriptomic landscape of lncRNAs in human placental trophoblasts. (A) UMAP plot showing first-trimester and term placental single-nucleus transcriptomes (CTB, cytotrophoblast; EVT, extravillous trophoblast; STB, syncytiotrophoblast; STR, stromal cell; e, early; l, late). (B) UMAP plot showing the distribution of first-trimester and term placental samples. (C) Pie plot of the fraction of lncRNAs and mRNAs in snRNA-seq and bulk RNA-seq, respectively. The value “ n ” indicates the average number of detected transcripts per cell for both lncRNAs and mRNAs based on the experimentally measured data. (D) Box plots of transcript counts in per cell type. Statistical significance was determined by two-sided Wilcoxon rank-sum tests (**** P < 0.0001). (E) Volcano plot of cell-type-specific lncRNAs across trophoblast subtypes. The x -axis represents the difference in the percentage of cells expressing each gene between the two compared cell types (Δ percentage = pct.1 − pct.2), while the y -axis indicates the log 2 (fold change) in average gene expression. This representation integrates both expression magnitude and expression prevalence at the single-cell level. (F) Heatmap of cell-type-specific lncRNA expression atlas across trophoblast populations. (G) UMAP plots showing the expression distribution of representative lncRNAs (Color gradient represents the average expression level per cell). (H) GO biological process terms enriched in protein-coding genes (PCGs) associated with stage-specific lncRNAs.

Article Snippet: For cross-platform validation: Three independent external datasets were utilized, including two single-cell RNA-seq datasets (accession numbers: HRA003309, GSE214607 ) and one single-nucleus RNA-seq dataset (singlecell.broadinstitute.org/single_cell/study/SCP2601).

Techniques: RNA Sequencing, Expressing, Gene Expression, Single Cell

H19 expression in different sarcoma subtypes. (A) H19 RNA‐seq expression data across cell lines from 38 different cancer types derived from the publicly available CCLE database. (B) H19 RNA‐seq expression data from 31 cancer types in tumor tissue derived from TCGA and GTEx data (SARC = sarcoma; TMP = Transcript Per Million). (C) The expression of H19 in 7 different sarcoma cell lines was measured by qRT‐PCR and normalized to the housekeeper genes GAPDH and U6 ( n = 3; mean ± SD). (D) Representative pictures of RNA in situ hybridization of H19 in the liposarcoma cell line SW872 showing a heterogenous expression pattern.

Journal: Cancer Medicine

Article Title: Clinical Significance and Therapeutic Potential of Long Non‐Coding RNA H19 in Soft Tissue Sarcoma

doi: 10.1002/cam4.71305

Figure Lengend Snippet: H19 expression in different sarcoma subtypes. (A) H19 RNA‐seq expression data across cell lines from 38 different cancer types derived from the publicly available CCLE database. (B) H19 RNA‐seq expression data from 31 cancer types in tumor tissue derived from TCGA and GTEx data (SARC = sarcoma; TMP = Transcript Per Million). (C) The expression of H19 in 7 different sarcoma cell lines was measured by qRT‐PCR and normalized to the housekeeper genes GAPDH and U6 ( n = 3; mean ± SD). (D) Representative pictures of RNA in situ hybridization of H19 in the liposarcoma cell line SW872 showing a heterogenous expression pattern.

Article Snippet: The online available RNA‐seq dataset provided by the Broad Institute Cancer Cell Line Encyclopedia (CCLE) was analyzed to compare H19 expression across multiple cancer cell lines ( https://portals.broadinstitute.org/ccle ).

Techniques: Expressing, RNA Sequencing, Derivative Assay, Quantitative RT-PCR, RNA In Situ Hybridization